PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G246500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 761aa    MW: 88870.2 Da    PI: 8.6401
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G246500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.75.3e-2011117188
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek. 72 
                         ++Y+eY+++ GF +r+++s+k+ +r +e+t+r+fvC  egk  +++++                  +++ ++ ++ ++gCka++++k+++ 
  Prupe.4G246500.1.p  11 NYYEEYGRQEGFWIRTRSSSKTrRRLDEVTSRQFVCAHEGKYVPKNTSqkaleendekdineienMKRTGKNCSTVKCGCKASMRIKLDRw 101
                         69*************999888867889**************9988888889*********9998766777788999*************** PP

                FAR1  73 dgkwevtkleleHnHe 88 
                         ++kw+v++++  HnH+
  Prupe.4G246500.1.p 102 SNKWKVSSFQDSHNHK 117
                         ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1711117IPR004330FAR1 DNA binding domain
PfamPF105517.4E-36236330IPR018289MULE transposase domain
PROSITE profilePS509669.94517553IPR007527Zinc finger, SWIM-type
SMARTSM005750.0071528555IPR006564Zinc finger, PMZ-type
PfamPF044347.6E-5530550IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MVFDTMEEAR NYYEEYGRQE GFWIRTRSSS KTRRRLDEVT SRQFVCAHEG KYVPKNTSQK  60
ALEENDEKDI NEIENMKRTG KNCSTVKCGC KASMRIKLDR WSNKWKVSSF QDSHNHKPVT  120
PERRMKMKSN RVMPKAAKIL TETFHEENLP IAKVPSIFGG PHIGFNNRDC YNHLRNVRHR  180
QLDGGDAQSV LTYFRKKQAE NPQFFYAIQC DENGRAANFF WVDARSRMAY NYFGDVVTFD  240
TTYRTNKYDM PFAPFTGVNH HLQSIQFGCA LLQDETEVTF LWLFETWLEA MGGRHPVSII  300
TDQDLAMKGA IAKIFPNTRH RLCLWHIKKK FAEKLSHVYF KKSKFKIQMK KCIRSTYKIE  360
EFEEKWKELM KECELANDDW LNSLYDIRSS WVPVYNRGIF FAGMNTTGRS EGINSFFDGF  420
VTPTTNLREF VVKYEQALKR IMDRESDEDF ESEHKYRIVN EGEFLLKHAA KFYTRNVFNK  480
FKDEWSKVTL YKVEEIPCDD EYHAYLVKTK LGEHEEFVVK LNLQTYKGMC ECQNFEFVGI  540
LCRHLLKVFV RLDIDTLPDH FILPRWRQEA NKFRIMDFKS LVTNDGKEES EALRLSHMCH  600
QATKLACIAA SSNEAYTTFI EALNELSKKL SDNSTQHATI PSSTTGDPCS TNIDSSQLLL  660
LDPNISQTKG RKKDNISGSK RLKSGIELAQ NKKKRKCALC KKIAQHDKRN CPSNLKRRKN  720
ESTNLCQKLM FNLILMNLNL GNEESEDLCQ DMESDDQEYC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G246500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815267.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-142FAR1-related sequence 5