PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G124000.1.p
Common NamePRUPE_ppa004704mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 500aa    MW: 54348.5 Da    PI: 7.7157
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G124000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.7e-10133157226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+G+ CkF H+
  Prupe.4G124000.1.p 133 GEKDCAHYMLTRTCKFGELCKFDHP 157
                         7889********************8 PP

2zf-CCCH28.33e-09184210127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f +t  Ck+G rCkF+H++
  Prupe.4G124000.1.p 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210
                         5789*********************96 PP

3zf-CCCH39.59.5e-13233257327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG+Ck+G++CkF+H++
  Prupe.4G124000.1.p 233 EPPCAFYMKTGQCKFGATCKFHHPK 257
                         79*********************96 PP

4zf-CCCH38.42e-12307332126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG++C+++H+
  Prupe.4G124000.1.p 307 PGEPDCPFYLKTGSCKYGATCRYNHP 332
                         5789*********************9 PP

5zf-CCCH36.96.1e-12394416426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+++++tG+C++G++Ck++H+
  Prupe.4G124000.1.p 394 IECDYYMKTGECRFGEQCKYHHP 416
                         68********************8 PP

6zf-CCCH40.25.5e-13447472227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         + ++C ++++tGtCkyG++CkF H+p
  Prupe.4G124000.1.p 447 GVAICVYYLKTGTCKYGATCKFDHPP 472
                         5789********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.436131159IPR000571Zinc finger, CCCH-type
SMARTSM003560.014131158IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7133157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183183211IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018183210IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-6185210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4189211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948230258IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6230257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6233258IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10233257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5235256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892306334IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7306333IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10308332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5311333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4312331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6389419IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028390418IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6390417IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9393416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4396416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516445473IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8445472IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10447472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6448472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6450470IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSSHLYGYGA TQSAAAAAAA TAGLSSVYTS RTLTDPTLRY LSGSDPFASA TDHHSRSSSM  60
YLATSHLMSQ SSWPAPDVEP GVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL  180
PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYM  240
KTGQCKFGAT CKFHHPKDIQ IPSAEQENKI GETGTTIQPE GTGFAVKLPV SFSPALLYNS  300
KELPVRPGEP DCPFYLKTGS CKYGATCRYN HPDRYDFCAA INPPIGAISH PIVAPPAAGL  360
NIGVINPAAS IYQTLAQPTV GGGQTVYPQR FGQIECDYYM KTGECRFGEQ CKYHHPIDRS  420
AVTLSTTKPV QQQNVKLTLA GLPRREGVAI CVYYLKTGTC KYGATCKFDH PPPGEVMGMA  480
ASQGASGGEA NDFTHEQQQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G124000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818006e-64LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132556e-64LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418212.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A251PJN00.0A0A251PJN0_PRUPE; Uncharacterized protein
STRINGEMJ130450.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)