PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G112200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 590aa    MW: 68906.1 Da    PI: 8.1104
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G112200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.94.3e-32231483127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         p +rF+P+deel++++Lk+k++g++l+++ +i+e+  y++ P +L  + + a++ke+yfF++ ++k + ++ ++r++++gyW  t k +++
  Prupe.4G112200.1.p  23 PEVRFQPKDEELITHFLKRKISGDPLPVNIIIDELSFYEYSPIQLSqMYAFAKQKEMYFFTPVERKFTDSTLPRRKARNGYWIPTSKYENI 113
                         669*************************999**************8344445888************************************ PP

                 NAM  93 lskkgelvglkktLvfykgrapk.gektdWvmheyr 127
                          + ++e +g+kk+L f+ gr+++ ++kt+W+m ey 
  Prupe.4G112200.1.p 114 EQ-GTEIIGVKKSLRFFAGRHRNaSTKTNWTMLEYI 148
                         99.999***********997665157*********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3614172IPR003441NAC domain
PROSITE profilePS5100536.80921173IPR003441NAC domain
PfamPF023659.1E-1823147IPR003441NAC domain
SuperFamilySSF813832.35E-13237317IPR001810F-box domain
PROSITE profilePS5018110.557239289IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.2E-9239279No hitNo description
PfamPF006461.3E-8241276IPR001810F-box domain
SMARTSM002564.8E-9245285IPR001810F-box domain
PfamPF082681.7E-4443514IPR013187F-box associated domain, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDSFEEENQS TMASEQYYMS LHPEVRFQPK DEELITHFLK RKISGDPLPV NIIIDELSFY  60
EYSPIQLSQM YAFAKQKEMY FFTPVERKFT DSTLPRRKAR NGYWIPTSKY ENIEQGTEII  120
GVKKSLRFFA GRHRNASTKT NWTMLEYIAG GTAAVSQSPY FLYDWVLCKV YEEELSAKKA  180
PESNNQGNAA NEEVTGEQLH PHIRTSPLED IFGAKKRRCL SKKYSGQLPL TICTSSYRRP  240
CLPELPFEVI IEILSRLPVE SVLRFKCVCR QWCSTFQEED FIAKHWVRAS PLRLPYRYRW  300
DYNNSVSFYE ENFKLIGNSC GLFLEKNYSS QVFRIRNFAM HQVLYLPHAL NAYINTMCFV  360
LNLSTGECKV AYFYIQGNLD AEVGLKVLTV GIDCQWRPLK LSNQTIWGQH EKYLLKRHIL  420
KPNQTEGAAH YVEIIRAGQD LYLEVQSFDL WTECFVTTRL PERVFGNLEK VFVFSWNHHL  480
AVGEIVEEAL NILVLEDFKD HKWSENKIVV PYKFLKDNPS LKNQIWAPVR VIYGKLELQG  540
VKSFLTYDME REIITRIEVG NDPDKEHFAS HKPSLLTFKG MRPKRVRCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-251917413169Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G112200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024199978.11e-102uncharacterized protein LOC112203215
TrEMBLA0A251PIY30.0A0A251PIY3_PRUPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-27NAC-like, activated by AP3/PI