PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G106100.1.p
Common NamePRUPE_ppa025263mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 310aa    MW: 35520.2 Da    PI: 8.908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G106100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.9e-49191481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         l pG+rFhPtdeelv +yL++kve+k+++l e ik +diyk++PwdLpk +   + kewyfF++r kky+++ r+nr+tksg+Wkatg dk
  Prupe.4G106100.1.p  19 LLPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKLIDIYKYDPWDLPKaSGIVGGKEWYFFCRRGKKYRNSVRPNRVTKSGFWKATGIDK 108
                         579***************************.89***************523334889********************************** PP

                 NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v+s    ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Prupe.4G106100.1.p 109 PVYSVgdFHSCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148
                         ****8554556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-555177IPR003441NAC domain
PROSITE profilePS5100553.57119178IPR003441NAC domain
PfamPF023655.4E-2621148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEVQNMMSDS NNIKEDTNLL PGYRFHPTDE ELVRFYLRRK VENKPIRLEL IKLIDIYKYD  60
PWDLPKASGI VGGKEWYFFC RRGKKYRNSV RPNRVTKSGF WKATGIDKPV YSVGDFHSCI  120
GLKKSLVYYR GSAGKGTKTD WMMHEFRLPA SSSKDDTSNI KNYTQEAEVW TLCRILKRDN  180
NYSCRKYASN WQKATSNPKQ IVADSSSKPC SPESDISFGA LAANKDQFER SPIFYNGHMY  240
EGNRFSAGDQ LSLKGEVDPM VNSYISFSNP KEDEMLTSDG NWDELRPMVD CVLNPSLLYS  300
CRVGTLESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4671833173Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G106100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417773.10.0transcription factor JUNGBRUNNEN 1 isoform X2
SwissprotQ9SK553e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A251PIM90.0A0A251PIM9_PRUPE; Uncharacterized protein
STRINGEMJ146370.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-85NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]