PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G057100.1.p
Common NamePRUPE_ppb024383mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 287aa    MW: 32498.8 Da    PI: 6.6512
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G057100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.46.1e-351102552131
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaess 78 
                         +++k rhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+++ak+ai +l ++               ++++++  +es 
  Prupe.4G057100.1.p 110 TARKERHSKVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSESelpgkeydctninsAQQTEQDIGEESM 200
                         789*************************************************************777666666533221222222222222 PP

                 TCP  79 sssasnsssgkaaksaakskksqksaa.salnlak.esrakarararertrekmr 131
                         ++ +++++s   ++++ ++ +s k++   +++l+  +  ++a   a   t +km 
  Prupe.4G057100.1.p 201 RQFQHHQRSYGGEPEKLNNVNSFKEPVlDHHQLSSmNYAEEALNSASSLTDSKME 255
                         2222222222333333322222222220223333323335555556666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-31111216IPR005333Transcription factor, TCP
PROSITE profilePS5136930.695112170IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSHLQDILRL QMLQQRGSKN EDQDQPEDVQ EEEQQSQKRL IGQYQHVQEP PNYGPLNGKM  60
LNTHTAKSSR KSCYSMSSSS SHLASEQAEI NNARYGKNVK VHGGHIVRST ARKERHSKVY  120
TSKGPRDRRF RLSAPTAIQF YDVQDRLGYD RPSKAIDWLI EKAKAAIEAL SESELPGKEY  180
DCTNINSAQQ TEQDIGEESM RQFQHHQRSY GGEPEKLNNV NSFKEPVLDH HQLSSMNYAE  240
EALNSASSLT DSKMEVAWFQ SLMSWNYNAG DGGEGCPFSS SHVYLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-19117170154Putative transcription factor PCF6
5zkt_B3e-19117170154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G057100.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214360.10.0transcription factor TCP4
TrEMBLM5WPC70.0M5WPC7_PRUPE; Uncharacterized protein
STRINGEMJ155590.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3