PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G053300.1.p
Common NamePRUPE_ppa008828mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 319aa    MW: 35868.3 Da    PI: 8.4839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G053300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.2e-34581981128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                         lp+G++F+Ptd+e++ ++L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++  
  Prupe.4G053300.1.p  58 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHte 144
                         799***********9.99****9999956644322..22222333336**********.666777788******************74444 PP

                 NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++vl  +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Prupe.4G053300.1.p 145 edgsETRWHKTGKTRPVLL-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 198
                         6555778************.9*************66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3852217IPR003441NAC domain
PROSITE profilePS5100533.8258217IPR003441NAC domain
PfamPF023651.9E-1559198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTWCNDSDDE RAIQIITPPP PPPPPSHNNN EFRNITCPSC GHHIEFQDQA GIHDLPGLPA  60
GVKFDPTDQE ILQHLEAKVL SDTRKLHPLI DEFIPTLEGE NGICYTHPEK LPGVNKDGQI  120
RHFFHRPSKA YTTGTRKRRK VHTEEDGSET RWHKTGKTRP VLLGGAVKGF KKILVLYTNY  180
GRQRKPEKTN WVMHQYHLGN NEEEKDGELV VSKVFYQTQP RQCGSSVKDV PMFDHHKGVN  240
IRSGHGHDPL PIAKKAGLVE YYNPGGGFIN YDHHNLHNQG GHNRESPPQL IPNLVVQGDG  300
SSFIRLTADA SKGKLERK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.56360.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G053300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211644.10.0NAC domain-containing protein 73
SwissprotO494591e-125NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM5WU500.0M5WU50_PRUPE; Uncharacterized protein
STRINGEMJ128430.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-125NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]