PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G006000.1.p
Common NamePRUPE_ppa002276mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 693aa    MW: 80051.6 Da    PI: 5.9391
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G006000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.41.8e-2169160190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHe
  Prupe.4G006000.1.p  69 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHE 158
                         59********************8888.*******************************************99867789************* PP

                FAR1  89 la 90 
                         l 
  Prupe.4G006000.1.p 159 LL 160
                         96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1969160IPR004330FAR1 DNA binding domain
PfamPF105516.2E-18293383IPR018289MULE transposase domain
PROSITE profilePS509669.804564599IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-7568599IPR007527Zinc finger, SWIM-type
SMARTSM005757.2E-4574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MTSPPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSSITSQ LVKNDSAGSE AMVSPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPV KKKPTGEHHR  120
DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE  240
NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMYG DAVYFDTSYQ  300
SITYGVLFGA WLGIDNHGRT IFFGCVLLQD ETPRSFSWAL QTFVRFMRGR CPQTILTDLD  360
PGLRDAISSE LPGTKHVISI WNILPKVSSW FSVSLGSRCA EFKSEFDVLY RVESTEDFEL  420
QWNQMISMFG LTTDKHIALL YSFRASWALS YMKGYFLACT ATTTYSKSVD AFLKGVFSAQ  480
TCLRSFFEQV GISANFQNQA RQEMQYMHIK TCIPIEEHVR SILTPFAFNA LQHELVLAMQ  540
YAVSEMSNGS YLVRHFKEID GERLVIWIPE EEQIHCSCKE FESSGLLCRH SLRVFVAKNY  600
FQLPDKYYLN RWRKESSLDF YDDHIARTSD DEWFQDYHCL TETLFTESSI TKERADYVRR  660
ELTTQLTRIL NEVRNMPECE GVAMDLTFSP TG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G006000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213613.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_020418793.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_020418794.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM5WLZ40.0M5WLZ4_PRUPE; Uncharacterized protein
STRINGEMJ148120.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]