PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G312800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 539aa    MW: 58932.2 Da    PI: 6.0333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G312800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11355397754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Prupe.3G312800.1.p 355 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 397
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16351418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9354397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15355410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-13355401No hitNo description
CDDcd048735.10E-7468509No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MLPMSSSAVW MGGDEDDAAS WTRSSSNNNN NEGEPKKEQQ SSWGASFSNF KSMLEGDWYM  60
NNVLNPTHHQ DLHSLPNHRQ PDIRDIACFS ENTLMLQQMD SSASCSPSQA FSLDPSPPQH  120
LFPPKSCFSS LLNVVSTNPF DNGFDLGCDS GLLSSFQGNQ PSNSSALMGF TTLNSQSQMG  180
TPELSSSAEF PTTRLLPAPN NDTVLDGDFS LTGFQGFDGS GGAQLLNRPK PLRPLHVFPP  240
VGAHPTLFQK RAALRQNSGG DGTDKLGNLE ISGPRYGGVL ESLERKRKKN VEGAMEEGSM  300
DVSGLNYDSD EFNEYSQVEE NVKNAGSNSN ANSTVTGVDG DRKGKKKGLP AKNLMAERRR  360
RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR INDLHNELES APPGSLLPPS  420
SCFQPLTPTP PTLPCRVKEE LCPSSFPSPK GQPAKVEVRV REGRTVNIHM FCARRPGLLL  480
SAMRALDNLG LDIQQAVISC FNGFALDVFR AEQCRESQFL PEQIKAVLLD SAGFHEMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288RKRKK
2344362KKKGLPAKNLMAERRRRKK
3356363ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6765370.0KR676537.1 Prunus mume Inducer of CBF expression b (ICEb) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231033.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-163ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW960.0A0A0S2CW96_PRUMU; Inducer of CBF expression b
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-142bHLH family protein