PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G252600.1.p
Common NamePRUPE_ppa007243mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 377aa    MW: 41407.6 Da    PI: 7.2393
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G252600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.71.2e-31551962133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.. 88 
                          g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ ++  ++ s + ++s+  ++  
  Prupe.3G252600.1.p  55 FGGKDRHSKVCTVKGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLPLPPSGNFglNHPSLVLTSSHGVQTha 145
                         689*************************************************************888884444322222222221111122 PP

                 TCP  89 ........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                                 +                   n ++  r k+++ ar+ t+e+   +
  Prupe.3G252600.1.p 146 haqlshdngegpsggiaqarshfwS------------------TNSDAIWRGKSKEIARDTTNEEEEEN 196
                         2222222211122222222222220..................12222333444444555444443333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.96657115IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2857195IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MIKSHNGADL QEAAGNSSRD DQANKFSTKA NDLSRPSTPW LRLKDPRIVR VSRAFGGKDR  60
HSKVCTVKGL RDRRVRLSVP TAIQLYDLQE RLGLNQPSKV VDWLLDAAKH EIDELPPLPL  120
PPSGNFGLNH PSLVLTSSHG VQTHAHAQLS HDNGEGPSGG IAQARSHFWS TNSDAIWRGK  180
SKEIARDTTN EEEEENQKDI STGSDQKEEG TVDGNSSSNN FLTRISTNHP FFPGLVNNAM  240
PYAYHNWDHN QPSNFPLSQL GSHGFPSQTA DLHNFINVVS LPSTLSLSTT QSYFPSHNAA  300
AAAEIDPRQF NHMHMLSSSS TSQNLLPNSL SPTLYPNSQT LRAPHLSMMT KLVRSSNNTT  360
GSDHHQPNTD QESPSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1862116155Putative transcription factor PCF6
5zkt_B2e-1862116155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.16700.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G252600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215550.10.0transcription factor TCP13
TrEMBLM5WST00.0M5WST0_PRUPE; Uncharacterized protein
STRINGEMJ167490.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.15e-43plastid transcription factor 1