PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G240200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 420aa    MW: 46879.2 Da    PI: 8.3391
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G240200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.44.3e-411312802132
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...ea 75 
                         + kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl+++ +aik+l                 s +s+s c   +a
  Prupe.3G240200.1.p 131 PMKKDRHSKIFTAQGLRDRRVRLSINVARQFFDLQDLLGFDKASKTLEWLLTKSRRAIKQLGTRnkhltcststgrskSLTSSSGCdddDA 221
                         679**********************************************************888899998887777665555566653222 PP

                 TCP  76 esssssasnsssg....kaaksaa.kskksqksaasalnlak.esrakarararertrekmri 132
                         +s+ ++++    +    +++   + k+k ++++++sa+ +   +srakarararertrek + 
  Prupe.3G240200.1.p 222 DSDTNEVE----NvasrEKEVMLMmKKKMKESESESANVYGTkDSRAKARARARERTREKLMC 280
                         22222222....1334444444443444444444444444446****************9764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-42132277IPR005333Transcription factor, TCP
PROSITE profilePS5136933.606133191IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.111260277IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MFSSCSSNIN STSVSPFQPY FPLSSSNYHP PPPPPPSFPC VNQEACSGDI FLHHNIQGYP  60
ISGQFPLHNN ALMAPPLPQS LTHLGVSSNT VPPSINADDH HPYHNYYGAI NNDNIFPHFL  120
HSSREDIVAP PMKKDRHSKI FTAQGLRDRR VRLSINVARQ FFDLQDLLGF DKASKTLEWL  180
LTKSRRAIKQ LGTRNKHLTC STSTGRSKSL TSSSGCDDDD ADSDTNEVEN VASREKEVML  240
MMKKKMKESE SESANVYGTK DSRAKARARA RERTREKLMC TTGSRPQMLN QLKLFNELDH  300
HQSNNNCKTM SSSSAKANIG DHPENQELGS LLANQLAHHH EDDPSVHVIK RNKLKQYSSV  360
YSNYNQQKYL NVVSAENTDQ SSNSHIQFPN AFQNWDTNGA FPCPNIHCAI TSINLSTGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-15138191154Putative transcription factor PCF6
5zkt_B3e-15138191154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G240200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216681.20.0transcription factor DICHOTOMA
RefseqXP_021815722.10.0transcription factor DICHOTOMA-like
TrEMBLA0A251Q5Z30.0A0A251Q5Z3_PRUPE; Uncharacterized protein
STRINGEMJ178800.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-28TCP family protein