PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G236200.1.p
Common NamePRUPE_ppa009213mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 303aa    MW: 32408.6 Da    PI: 7.8678
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G236200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-3141081100
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  Prupe.3G236200.1.p   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallkee 100
                         l+q+++e++l +++
  Prupe.3G236200.1.p  95 LCQAAVEAVLKGQP 108
                         *******9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.5E-981298IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.23109IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT SITSEAAADG  120
HGPPLKAYDI RHVSKDENSA ASNEPKQAKT RYRFKRSVVK PKASKVGSGS GSGADDSAKP  180
SCAGCCADEF NRSTSHESSL SHQSEAAANV DGESKETESM VSSETAEAEL LFRPEPESAR  240
KRSEPVQEGE LALELTLGLE PQSRAHHVVP VKKRRIDAYG LGGRSSADDG ACKMELGLDL  300
VA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.134130.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215745.10.0hypothetical protein PRUPE_ppa009213mg
SwissprotQ9M8861e-115LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM5WTB80.0M5WTB8_PRUPE; Uncharacterized protein
STRINGGLYMA19G06280.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-98LOB domain-containing protein 41