PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G198400.2.p
Common NamePRUPE_ppa002284mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 693aa    MW: 79878.6 Da    PI: 6.2398
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G198400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.3e-2471162190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w+v+++++ HnHe
  Prupe.3G198400.2.p  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVMQWYVSQFSNVHNHE 160
                         69********************8888.******************************************998766779************* PP

                FAR1  89 la 90 
                         l 
  Prupe.3G198400.2.p 161 LL 162
                         96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-2271162IPR004330FAR1 DNA binding domain
PfamPF105518.4E-23294387IPR018289MULE transposase domain
PROSITE profilePS509669.693566601IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-7571598IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIQYEGD DLGSVSSQHV KSETTPSSSS SEAVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRERKSVRCG CDAKLYLTKE IVDGVMQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEVD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLNEK  240
RENDMLELLE ACKAMTGRDP DFVYDYTIDE NEKVENIAWS FGDSIRAYTI FGDVVAFDTS  300
YRSVTYGLLL GVWFGIDNHG KAIFLGCVLL QDESSHSFAW ALQAFMRFMR GRHPQTVLTD  360
IDSGLRDAIA RELPNTKHVL CIWHILSKIS SWFSLPLGSQ YENFKTEFDM LSQLESVEDF  420
EHQWNILVAR FGLVSDKHIA LLYSYRASWT FSYIRSYFLA RTLTAEFSLS LESFLKRILN  480
GQTCLQVFFE QVSIAANLEN QTREGMQYMH VKTGMPLEEH ARNILTPYAF NVLQHEIVLS  540
VQYATTEMAN GSYLVRHYKK LEGECLVIWM PDDEQIHCSC KEFEHSGILC RHSLRVLVVK  600
NYFQLPEKYF LLRWRVESSL VSVDDQNAQI SSDDCAQAFH SLTASLLTES LISKDRFNYV  660
HNELTSLLEH VRNMPVIDEY AANAAANNIS ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G198400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217000.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM5WX170.0M5WX17_PRUPE; Uncharacterized protein
STRINGEMJ181990.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]