PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G197300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 138aa    MW: 15048.9 Da    PI: 5.8276
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G197300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB140.73.8e-4425111297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdrflPianvsrimkk+lPanakiskdaketv         fvt+easdkcqrekrktin+ddllwa++tl fe+y+eplkvyl+kyre
  Prupe.3G197300.1.p  25 REQDRFLPIANVSRIMKKALPANAKISKDAKETV---------FVTGEASDKCQREKRKTINSDDLLWAMTTLRFEEYMEPLKVYLHKYRE 106
                         89******************************98.........9*********************************************** PP

               NF-YB  93 legek 97 
                         legek
  Prupe.3G197300.1.p 107 LEGEK 111
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.7E-3919121IPR009072Histone-fold
SuperFamilySSF471135.83E-3127119IPR009072Histone-fold
PfamPF008089.6E-163085IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-124967No hitNo description
PRINTSPR006151.9E-126886No hitNo description
PRINTSPR006151.9E-1287105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MADSDNDSGG NNDGSHAQSR ELSAREQDRF LPIANVSRIM KKALPANAKI SKDAKETVFV  60
TGEASDKCQR EKRKTINSDD LLWAMTTLRF EEYMEPLKVY LHKYRELEGE KTIMGGRDKD  120
SAGGGGGGLP VEVAVTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-3525106292Transcription factor HapC (Eurofung)
4g92_B2e-3525106292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229927.12e-72PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233101e-63NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A061DU548e-64A0A061DU54_THECC; Nuclear transcription factor Y subunit B-3
TrEMBLB9SYE34e-64B9SYE3_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGVIT_12s0057g01010.t018e-62(Vitis vinifera)
STRINGVIT_19s0015g00440.t016e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-58nuclear factor Y, subunit B3