PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G148900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 390aa    MW: 45009.2 Da    PI: 8.813
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G148900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.5e-201163350
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50
                        i n++ r++tf kRr+g++KKA+E S+LC+ +v++ii+++++     +l++++
  Prupe.3G148900.1.p 11 IANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQtdrppELHTWP 63
                        89**************************************9844444477776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.497151IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-20162IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21298IPR002100Transcription factor, MADS-box
CDDcd002664.17E-23271No hitNo description
PRINTSPR004042.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRGRLKMEL IANERARKTT FQKRRKGMMK KAYEFSTLCE LDVCMIIYGP KQTDRPPELH  60
TWPENRDEVD RIINKYKASI MRKPAKKTFD LSDLLRDRKT KVHVDIYRAR KEMYEAKYPT  120
WDERIESFSE NQLEALLNTL DTKLESGKRT LLNKRKQSAE CHQHQIHCMG KAAPNKIMLM  180
GGNPNNNIIG ESPSQKQPCN YFMQGHVREE DQKPMRSLSN NMVDMHPVSS FDHHHHQSSD  240
QMLQLDNSNE YLNSLVAHNP SPMAMWMLME SNYNYSTLQF SSGASSSAHS QSPLEGYQSN  300
FNDPMMQSTV DNMNMNMMML NGNINPPSSS SMSQYYARLM HPTVPYMQQY PMMPAAGVSS  360
HQVQVHASQG KDEPYENINQ YVVMNNRMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G148900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415605.10.0MADS-box transcription factor 50
TrEMBLA0A251Q0K40.0A0A251Q0K4_PRUPE; Uncharacterized protein
STRINGXP_008229316.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-25M-type_MADS family protein