PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G090300.1.p
Common NamePRUPE_ppa002486mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 669aa    MW: 76827 Da    PI: 5.369
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G090300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.32.3e-2260142290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+v+++eleHnH ++
  Prupe.3G090300.1.p  60 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEVELEHNHLIS 142
                         9***************99997.66779**************99888.....***********************************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1960142IPR004330FAR1 DNA binding domain
PfamPF105512.0E-28263357IPR018289MULE transposase domain
PfamPF044341.4E-4550583IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.26550586IPR007527Zinc finger, SWIM-type
SMARTSM005756.7E-6561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MDEVSLNTEP AGDDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF  60
YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDSNRWRV IEVELEHNHL ISPASGKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV  180
IIDSEGNGSI DVDEGESGNR VDYSNQLKLK EGDAQAVQNY FSRLQLMDPN FFYVVDLNEK  240
GCLRNLFWAD ARTRVAYSYF CDIVAIDATC LENKFEVPLV SFIGVNHHGQ SVLLGCGLLA  300
SETVESYTWL FRAWLTCILG RPPQAIITSQ CRTLQTAISD VFPRASHCLC LSHIMQKFPE  360
NLGGLFEYEA IKESFSRAVY YSLRVEEFEA AWEDMVQRHG IRDHKWLQAL FDDRKRWVPV  420
YLKDIFLAGM SPVQPSEVVS SYFKEFLHKD TPLKEFLDKY DQALQTHHRL EALADLDSRN  480
SSYMLKSGCY FELQLSKVYT NDILRKFESE VEGMYSCFST SQLNPDGPVI THIVKEQTEV  540
DGNRREVRDY EVLYNPSEME VLCICGMFNL RGYLCRHALS VLNQNGVEEI PAQYVLSRWR  600
KDIERNYIFD HSCSGIDINN PVHRYDHLYK CIVQVVEEGR KSQDRYKVAF GALDEILNKL  660
CLTEDPAL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G090300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215010.10.0protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLM5WRA10.0M5WRA1_PRUPE; Uncharacterized protein
STRINGEMJ162090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]