PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G042900.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 665aa    MW: 72753.7 Da    PI: 6.226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G042900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08551599348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
  Prupe.3G042900.5.p 551 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 599
                         7**************************99999*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869544603IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-12546605IPR009057Homeodomain-like
SuperFamilySSF466891.3E-15546610IPR009057Homeodomain-like
SMARTSM007171.2E-8548601IPR001005SANT/Myb domain
CDDcd116601.40E-19550600No hitNo description
PfamPF002494.0E-6551599IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
METVVGVEGS DEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME  60
VEEFLVDEKI ELPVVTDAGN VECISNEESS SGKSHKESSE GLSHSENTEP DAKLSARLEY  120
IEEMLQKVKQ EEKLRLACGS PDHSSAFMNV DSQCTDQHDK LPAIDKKLQS EIPLQEIVPS  180
SDLSLDDSHI NESARIGECS KPPDGPIESG SPASVICNSS KPDFYTLKGE ICLDNLSIRE  240
LHGLFRATFG RETTVKDKLW LKRRIAMGLT NSCDVSTTTF TIIDNKLVNK GTDNSFQNAD  300
GMLTEGSDGE AKNLGYETSP TSHSSQMENH QIVLGKRLGN LSVELDCGSD DLQMEHRGAK  360
RVRKPTKRYI EELSEVESRD YTPKVISSAK NTGQGQTSPK YCIRPPGNAP LNERTIVTRL  420
DSLGGSGVQV PFVSRVRRSR PRKNIMALMK FDSSGMGVAA KLVQEALSVH SSPPESEHAD  480
KDSKVRSASE QIQPQFAAEP EKDKRRSVMS TIELGKNLGL KQTDSSEDNS DDGIATVPTA  540
KGGMRRKHHR AWTLVEVIKL VEGVSKCGTG RWSEIKRLSF ASYSYRTSVD LKDKWRNLLK  600
ASFAQTPPDD GINSRKHASV PIPAAILLKV RELAEMHAQV PPNLGPGKLP SVSRSVHQTR  660
SGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436442RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228212.10.0PREDICTED: uncharacterized protein LOC103327648
TrEMBLM5WX220.0M5WX22_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-118TRF-like 6