PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G042900.2.p
Common NamePRUPE_ppa003052mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 609aa    MW: 66356.4 Da    PI: 6.411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G042900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08495543348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
  Prupe.3G042900.2.p 495 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 543
                         7**************************99999*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869488547IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-12490549IPR009057Homeodomain-like
SuperFamilySSF466891.14E-15490554IPR009057Homeodomain-like
SMARTSM007171.2E-8492545IPR001005SANT/Myb domain
CDDcd116601.23E-19494544No hitNo description
PfamPF002493.6E-6495543IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
METVVGVEGS DEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME  60
VEEFLVDEKI ELPVVTDAGN VECISNEESS SGKSHKESSE GLSHSENTEP DAKLSARLEE  120
IVPSSDLSLD DSHINESARI GECSKPPDGP IESGSPASVI CNSSKPDFYT LKGEICLDNL  180
SIRELHGLFR ATFGRETTVK DKLWLKRRIA MGLTNSCDVS TTTFTIIDNK LVNKGTDNSF  240
QNADGMLTEG SDGEAKNLGY ETSPTSHSSQ MENHQIVLGK RLGNLSVELD CGSDDLQMEH  300
RGAKRVRKPT KRYIEELSEV ESRDYTPKVI SSAKNTGQGQ TSPKYCIRPP GNAPLNERTI  360
VTRLDSLGGS GVQVPFVSRV RRSRPRKNIM ALMKFDSSGM GVAAKLVQEA LSVHSSPPES  420
EHADKDSKVR SASEQIQPQF AAEPEKDKRR SVMSTIELGK NLGLKQTDSS EDNSDDGIAT  480
VPTAKGGMRR KHHRAWTLVE VIKLVEGVSK CGTGRWSEIK RLSFASYSYR TSVDLKDKWR  540
NLLKASFAQT PPDDGINSRK HASVPIPAAI LLKVRELAEM HAQVPPNLGP GKLPSVSRSV  600
HQTRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380386RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217148.10.0hypothetical protein PRUPE_ppa003052mg
TrEMBLM5WX220.0M5WX22_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-101TRF-like 6