PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G032300.3.p
Common NameERF2.a, PRUPE_ppa006366mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 383aa    MW: 42495.9 Da    PI: 4.5636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G032300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-19112161255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Prupe.3G032300.3.p 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 161
                         69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.0E-38112175IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22112171IPR016177DNA-binding domain
PROSITE profilePS5103223.947112169IPR001471AP2/ERF domain
CDDcd000181.39E-32112170No hitNo description
Gene3DG3DSA:3.30.730.101.9E-32112171IPR001471AP2/ERF domain
PRINTSPR003671.1E-11113124IPR001471AP2/ERF domain
PfamPF008471.5E-11113161IPR001471AP2/ERF domain
PRINTSPR003671.1E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MCGGAIISDF IAPTRSRLTA DYLWPDLKKP SSDKRFSKPL RPEIIDLDHD FEADFQEFKD  60
ESDVDEDDEM VEAKPSAFSA GKPSSARGST TVKLVEFNGQ AEKSAKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDSEARRIR GKKAKVNFPD ETPRSSAKRS  180
VKANPQKMLP KTNTNAVQPN LNQNINFVND PNQDYYNAMG FLDEKPATNN FGFMSTFPAN  240
EDVALKSSTP SDAVPLYFSS DQGSNSFDCS DFGWGEQGSK TPEISSVLSC VMEESDDSLF  300
LEDASPTKKL KSNPEDLVPV QDNAGKTLTD ELSAFEMKYF QTPYLDGSWD ASVDAFLSTD  360
ATQDGGNSVD FWSFDDLIGG GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.2240.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8250960.0HQ825096.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.a) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215451.10.0hypothetical protein PRUPE_ppa006366mg
RefseqXP_007215452.10.0hypothetical protein PRUPE_ppa006366mg
SwissprotQ9SSA82e-84RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLH2BDK50.0H2BDK5_PRUPE; Ethylene responsive factor (Fragment)
STRINGVIT_09s0002g00470.t011e-158(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-83related to AP2 12
Publications ? help Back to Top
  1. Sherif S,El-Sharkawy I,Paliyath G,Jayasankar S
    Differential expression of peach ERF transcriptional activators in response to signaling molecules and inoculation with Xanthomonas campestris pv. pruni.
    J. Plant Physiol., 2012. 169(7): p. 731-9
    [PMID:22410465]