PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G021400.1.p
Common NamePRUPE_ppa016025mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 166aa    MW: 18759.2 Da    PI: 8.7783
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G021400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-2248134190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn+YA+e+GFsvr  +skks ++ge++++++vC+keg+ ++e++     +r r + r +Cka+l v k+k g ++vt +e+ H+H+++
  Prupe.3G021400.1.p  48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--VVKRCRGVGRESCKARLIVVKSKYGGYVVTIFEEAHTHPMT 134
                         6*****************9999.8889***************99988..8889999*******************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1948134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS  60
VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGVVKRCRG VGRESCKARL IVVKSKYGGY  120
VVTIFEEAHT HPMTTPRRRH LLKSHRRISG VDQLVAQQLI SVNAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G021400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216198.11e-121protein FAR1-RELATED SEQUENCE 5
TrEMBLM5WUA31e-120M5WUA3_PRUPE; Uncharacterized protein
STRINGEMJ173971e-121(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-20FAR1-related sequence 5