PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G009400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 214aa    MW: 23101.2 Da    PI: 10.3669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G009400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-211665255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Prupe.3G009400.1.p 16 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 65
                        59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-311575No hitNo description
PROSITE profilePS5103223.1431673IPR001471AP2/ERF domain
SMARTSM003807.5E-381679IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-231674IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-321674IPR001471AP2/ERF domain
PRINTSPR003671.5E-111728IPR001471AP2/ERF domain
PfamPF008471.6E-141765IPR001471AP2/ERF domain
PRINTSPR003671.5E-113955IPR001471AP2/ERF domain
PRINTSPR007836.1E-13146168IPR000425Major intrinsic protein
SuperFamilySSF813385.63E-17152207IPR023271Aquaporin-like
Gene3DG3DSA:1.20.1080.106.3E-20153208IPR023271Aquaporin-like
PfamPF002301.3E-17153203IPR000425Major intrinsic protein
PRINTSPR007836.1E-13186206IPR000425Major intrinsic protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKQVFSSGSP PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA  60
YKLRGDFARL NFPHLRHNGS SVGGDFGEYK PLHSVDAKLQ AICEGLAETQ KQGKAAGKPS  120
KRSSAARAPA PPPEVKVETS SSPVMTDSDG SAGLATIPIT GTGINPARSF GPAVIFNNEK  180
AWDDQWIFWV GPFVGALAAA AYHQYILRAA GQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4jc6_N3e-28154210211267Aquaporin
4jc6_L3e-28154210211267Aquaporin
4jc6_J3e-28154210211267Aquaporin
4jc6_H3e-28154210211267Aquaporin
4jc6_D3e-28154210211267Aquaporin
4jc6_C3e-28154210211267Aquaporin
4jc6_B3e-28154210211267Aquaporin
4jc6_A3e-28154210211267Aquaporin
4ia4_D3e-28154210211267Aquaporin
4ia4_C3e-28154210211267Aquaporin
4ia4_B3e-28154210211267Aquaporin
4ia4_A3e-28154210211267Aquaporin
1z98_M3e-28154210211267aquaporin
1z98_A3e-28154210211267aquaporin
2b5f_D4e-28154210211267aquaporin
2b5f_C4e-28154210211267aquaporin
2b5f_B4e-28154210211267aquaporin
2b5f_A4e-28154210211267aquaporin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.62785e-94fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695560.0KT369556.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221531.11e-108hypothetical protein PRUPE_ppa020676mg, partial
SwissprotQ8H1E46e-70RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLM5XUF31e-108M5XUF3_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_18s0001g05250.t012e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-55related to AP2 4