PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G302500.1.p
Common NamePRUPE_ppa025042mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 393aa    MW: 43637.2 Da    PI: 4.8619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G302500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31231289259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+g+H+h+
  Prupe.2G302500.1.p 231 ADLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCSARKQVERSTADPNIFVVTYTGDHTHP 289
                         699************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-31217291IPR003657WRKY domain
PROSITE profilePS5081132.891225291IPR003657WRKY domain
SuperFamilySSF1182901.7E-26226291IPR003657WRKY domain
SMARTSM007746.8E-38230290IPR003657WRKY domain
PfamPF031063.9E-26232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MADDWDLYAV VRSCKSATHA TTTNTSAAGA PTNPITPPSA EEEYSFWEWL KSEEETDPLF  60
SFPNLLEPRA NAFQELQQFY EPLLPNPTTT NNPSTNNNTF VPPIIPNSPI ISDFGGSASS  120
GQHHLQQQQH HFLPTNTPAS PHFNPAIFPP GFGEFHGQQQ PLLLPKPETQ ILPQQLPTQQ  180
GFMRPRAMVP ALPPPLPRAP FTMPINSPRP RKRKCQQKRQ VCQVSAENLS ADLWAWRKYG  240
QKPIKGSPHP RNYYRCSSSK GCSARKQVER STADPNIFVV TYTGDHTHPR PTHRNSLAGS  300
TRNKLSAMAG QNQPINNDSG SPPAQADQDV VANNVNSDNS LDKENEELDE DEEERDENEI  360
EDEDVEEDDV LIPNTAMSDE IFLGLKQLGC TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-192312921780Disease resistance protein RRS1
5w3x_D4e-192312921780Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G302500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414064.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 27
TrEMBLA0A251QNR50.0A0A251QNR5_PRUPE; Uncharacterized protein
STRINGEMJ208400.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-46WRKY DNA-binding protein 27