PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G301500.1.p
Common NamePRUPE_ppa008749mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 321aa    MW: 34779.3 Da    PI: 9.051
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G301500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-1260104147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Prupe.2G301500.1.p  60 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104
                         789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-1554110IPR009057Homeodomain-like
PROSITE profilePS5129413.31555109IPR017930Myb domain
TIGRFAMsTIGR015578.2E-1858107IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-558110IPR009057Homeodomain-like
SMARTSM007172.0E-959107IPR001005SANT/Myb domain
PfamPF002491.4E-960104IPR001005SANT/Myb domain
CDDcd001672.78E-762105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVSKNPNPPE GLYLDPSGMA LPGLGPFASV TTSATTTSTT SSSEDLSKKI RKPYTITKSR  60
ESWSEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK NGTSEHLPPP  120
RPKRKAAHPY PQKASKNALA LPQVSGSCQS SSALHESGFI QRPDSASMLM SPVPGTVVPS  180
WTDGSMQTAN LSHESKGPTA PNNSCSSTES TPKAQPVGGT ADLVIPSHAL RVLPDFSQVY  240
SFIGSVFDPN VTGHLQKLKK MDPIDVDTVL LLMRNLSINL SSPDFEDHRK LLSSYKIDAD  300
TASHGDATKS LCDDQHKKVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744760.0DQ074476.1 Malus x domestica MYBR5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218691.10.0hypothetical protein PRUPE_ppa008749mg
SwissprotQ8H0W31e-129RVE6_ARATH; Protein REVEILLE 6
TrEMBLM5XLG60.0M5XLG6_PRUPE; Uncharacterized protein
STRINGGLYMA16G29740.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-112MYB_related family protein