PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G272400.1.p
Common NamePRUPE_ppa008915mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 315aa    MW: 35018.8 Da    PI: 6.6099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G272400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20137187255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka++ a+ kl+g
  Prupe.2G272400.1.p 137 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDLAAFKLRG 187
                         7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-32136196IPR001471AP2/ERF domain
CDDcd000181.31E-30137195No hitNo description
SuperFamilySSF541716.34E-23137196IPR016177DNA-binding domain
PfamPF008478.1E-15137187IPR001471AP2/ERF domain
PROSITE profilePS5103224.843137195IPR001471AP2/ERF domain
SMARTSM003806.6E-36137201IPR001471AP2/ERF domain
PRINTSPR003672.2E-13138149IPR001471AP2/ERF domain
PRINTSPR003672.2E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MATEHEETSA LELIRQHLLN EFTSMDSFIS SLHLCTSQIP QPQISHFPSQ SKTNSITSSD  60
QYFRISDFLI PEIDQDTQFE TKPQIAHPKP PRHSTLSHRK PAINVAIPSP PVLSGDEPQN  120
PSSSNNVVVE ASETARHYRG VRRRPWGKYA AEIRDPNRRG SRVWLGTFDT AIEAAKAYDL  180
AAFKLRGSKA ILNFPLEAGK TAETEQPPQT TVGGSRKRRR ESSEQSTDSQ ERQSTDSQER  240
QSSEEISNKE MKKENQEMVS SSSSNSGVCP LTPSSWTAVW DISKENEQGI FSVPPLSPLS  300
PHTSFLGFPQ LMVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28136196161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215219RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.45570.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695460.0KT369546.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218706.10.0hypothetical protein PRUPE_ppa008915mg
TrEMBLM5XLH90.0M5XLH9_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s15040.12e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-55ERF family protein