PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G272300.1.p
Common NamePRUPE_ppa010186mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 261aa    MW: 29210.8 Da    PI: 7.0501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G272300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19125175255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  Prupe.2G272300.1.p 125 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAYRMRG 175
                         7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-32124184IPR001471AP2/ERF domain
CDDcd000188.16E-32125184No hitNo description
PROSITE profilePS5103224.197125183IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23125185IPR016177DNA-binding domain
PfamPF008479.3E-15125175IPR001471AP2/ERF domain
SMARTSM003801.6E-36125189IPR001471AP2/ERF domain
PRINTSPR003671.4E-10126137IPR001471AP2/ERF domain
PRINTSPR003671.4E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MIMSDNNQSL MPCLTEQWGD LPFKVDDSED MIVYSSLNDA LSFGWLPDHS LYEYVKPEPL  60
LYDPFDHHNA LPNLFTQFQQ YHDVNNAPII LPFEHHHHHD QKQVQVADAA DQNKAPKSGV  120
ARGRHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTYETSE EAALAYDRAA YRMRGSKALL  180
NFPHRIGLNE PPPVRVTGKR KEPEAEAAAA ADASTTTPKS AKRTKASSVA EHDHHQANVC  240
LTRQKTSMGL LPLGEQLLVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-37121190170ATERF1
3gcc_A3e-37121190170ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.162160.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8250950.0HQ825095.1 Prunus persica cultivar Venture ethylene responsive factor (ERF1.b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218833.10.0hypothetical protein PRUPE_ppa010186mg
SwissprotQ404793e-78ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLM5X1T10.0M5X1T1_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-55ethylene responsive element binding factor 1