PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G201600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 324aa    MW: 35729.1 Da    PI: 5.7001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G201600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.38.2e-29181381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         l pG++F+Ptd+el+++yLkkk++g++ e++++++e+++ ++eP+dLp          +fFs+ d  +++g+   r+t++g+ k+tgk + 
  Prupe.2G201600.1.p  18 LLPGIKFSPTDKELLSFYLKKKIAGEDSEFSNIMPEINLREHEPRDLP--------TEFFFSEPDYMSPNGDSCYRTTNRGFYKSTGKPRG 100
                         579***************************999**************9........359******************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++ +++++g k+ + fy+grap+ + t+ v+h+++l
  Prupe.2G201600.1.p 101 IEDElSKAVIGEKRYMPFYEGRAPEHKLTEYVLHQFSL 138
                         **9988899***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3015160IPR003441NAC domain
PROSITE profilePS5100531.13718160IPR003441NAC domain
PfamPF023652.0E-1320138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGSGGGTTDE RVSVPMGLLP GIKFSPTDKE LLSFYLKKKI AGEDSEFSNI MPEINLREHE  60
PRDLPTEFFF SEPDYMSPNG DSCYRTTNRG FYKSTGKPRG IEDELSKAVI GEKRYMPFYE  120
GRAPEHKLTE YVLHQFSLTK TELAKLAPNR EFVLNHLTIK KGSTKARNPK PNYKKRKYDS  180
NCDKLAERGI PGYIASNYKD DQAAAAANMI PEPEEHLAVE DVLLGSENRN ECAESESANG  240
SRLINNNDSS TLAVGSPGGC FPSGYGNVAA NDPFREVSFQ PEGNLISPFH PSSLRDIPLR  300
SPVHTGLLED VVCVNNSILI GMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-1621381142NO APICAL MERISTEM PROTEIN
1ut4_B4e-1621381142NO APICAL MERISTEM PROTEIN
1ut7_A4e-1621381142NO APICAL MERISTEM PROTEIN
1ut7_B4e-1621381142NO APICAL MERISTEM PROTEIN
4dul_A4e-1621381142NAC domain-containing protein 19
4dul_B4e-1621381142NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176PKPNYKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G201600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413550.10.0NAC domain-containing protein 60
TrEMBLA0A251QIK60.0A0A251QIK6_PRUPE; Uncharacterized protein
STRINGEMJ205870.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3993222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.16e-27NAC domain containing protein 57