PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G152600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 297aa    MW: 31620.8 Da    PI: 7.3505
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G152600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.71.8e-37581612104
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +       ++ +++   
  Prupe.2G152600.1.p  58 APKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVN-------GALKIPtsa 141
                         799*************************************************************88888555211.......112222111 PP

                 TCP  89 ...kaaksaa.kskksqksa 104
                            +  ++ + k+k++++s+
  Prupe.2G152600.1.p 142 pdpRPGEDPPdKKKRKRNSN 161
                         21222222221222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3063152IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14164118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTMTEKRELE PDQATPSVDL RINGGEESDS EEPAGPSQAL MLAPKDERDV AMPVAVHAPK  60
RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG  120
TGTVPAIAMS VNGALKIPTS APDPRPGEDP PDKKKRKRNS NSEYVDLNDG VSASAGLAPL  180
TTERHHQQPP TAAVQAVVPQ GVLPMWAIPS NGVVPGAFFM VPSASTQPHI FTFPTTVAAA  240
PFINISARPI SSFVGPSSAA ATTHMAASTA PQTLRDFSLE IYDKKELQFM SGSSNH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G152600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458665e-51EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220356.20.0transcription factor TCP9
SwissprotO646477e-86TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A251QG710.0A0A251QG71_PRUPE; Uncharacterized protein
STRINGXP_008232850.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-82TCP family protein