PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G146600.1.p
Common NamePRUPE_ppa010383mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 253aa    MW: 25810.2 Da    PI: 7.8624
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G146600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37e-40271271100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l
  Prupe.2G146600.1.p  27 PCGACKFLRRKCVLGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSL 117
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael++l+++
  Prupe.2G146600.1.p 118 QAELSYLQAH 127
                         *****99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.64926128IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-3927125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNATNPSGSG GGGGGSSSSG GGGGGGPCGA CKFLRRKCVL GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLLHIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVSLQAE  120
LSYLQAHLAT LELPSPPPPP PPPSIITPPP LSISDLPLAA SSMPATYDLS SLFEPMVIQQ  180
PWVVQHRALH DPRHHQFGGG SSGSGSSSTG GGGGGGGDLQ SLARELLHRH GQSLSPGSLP  240
CSEASPSQSP SK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218850.11e-180hypothetical protein PRUPE_ppa010383mg
SwissprotO221312e-83LBD18_ARATH; LOB domain-containing protein 18
TrEMBLM5X2B01e-180M5X2B0_PRUPE; Uncharacterized protein
STRINGVIT_15s0048g00830.t012e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-70LOB domain-containing protein 18