PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G146500.1.p
Common NamePRUPE_ppa017589mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 233aa    MW: 25008.5 Da    PI: 8.1634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G146500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-39241241100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l
  Prupe.2G146500.1.p  24 PCGACKFLRRKCIKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVSHIFTLQQQVVNL 114
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Prupe.2G146500.1.p 115 QAELAYVQAR 124
                         ******9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.42423125IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-3824122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSGSSTNGSN NNGGGGGGGG GGGPCGACKF LRRKCIKGCI FAPYFDSEQG TAHFAAVHKV  60
FGASNASKLL LRIPPHKRLD AVVTLCYEAL ARVRDPVYGC VSHIFTLQQQ VVNLQAELAY  120
VQARLATLQR APPPLPLPQL ECPPPPRSLH YSSSHINVTS PPCSEFVPTS NLLTHFDPLQ  180
TVPHTAEMTS LFNSLDQELI DGEDLQALAR EFVCRYLPGV RLNKPSTSHQ NF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220875.11e-172hypothetical protein PRUPE_ppa017589mg
SwissprotO813223e-67LBD31_ARATH; LOB domain-containing protein 31
TrEMBLM5X8001e-172M5X800_PRUPE; Uncharacterized protein
STRINGVIT_15s0048g00840.t013e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.18e-61LOB domain-containing protein 19