PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G138400.4.p
Common NamePRUPE_ppa001781mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 652aa    MW: 71503 Da    PI: 5.4063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G138400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.21.9e-7737265087374
                GRAS  87 vsPi.lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                         +sP+ l+f+++t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R+ g+ps++iT++ s++++++ e+  t+e+L++fA+el+++f
  Prupe.2G138400.4.p 372 LSPVvLQFANFTCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNCGAPSFKITAFISSSTHDEFEIGFTRENLKHFASELNLSF 462
                         5674279*********************************************************9*9************************ PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         e +++  ++l+    + L ++  E +aV + l + ++ ++++sl+      L++vk+lsPk+vv  ++ +d+++ +F+++++++l+ ys l
  Prupe.2G138400.4.p 463 ELELVSLEALN-SGSWGLPLHVSEGVAVAVNLPIGSFSNNPLSLTM----ALRFVKQLSPKIVVSLDRGSDRTDVPFAHQIIQSLHSYSGL 548
                         ***97444444.4467776666777777777777888889999999....***************************************** PP

                GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                         ++sl+a    + ++ +k+Er ll++ i+++v+ ++ +     ++   Wr  ++++GF+p+++s+++++qa++l++++++ g+++e+++ sl
  Prupe.2G138400.4.p 549 LESLDAV-NVNPDALQKIERYLLQPGIEKIVTGRHLS----PKRTPPWRTLFSSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSL 634
                         ****665.34668999****************99998....9999********************************************** PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         vl+W+++ L+svS+Wr
  Prupe.2G138400.4.p 635 VLCWQHKDLISVSVWR 650
                         ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.668258630IPR005202Transcription factor GRAS
PfamPF035146.7E-75372650IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKAMPLPFEQ FQGKGVLDFS SSTSDSQPPQ NQHLHHHHNQ QQQQQKWNQN SNKENCYVGS  60
TEPTSVLDAR RSPSPPTSSS TLSSSLGGGG GASGGGGGGS GSTDTTTCLG TTAAAVYENI  120
SQTPIEESKC GPALGMEDWE SVLPESPGQE QSILRLIMSD IEDPSLGLNK LLQSGSGSDQ  180
QDLEFSAGFH DVVDQGGYDG FEPNTGNLQQ QHMGMDEKPQ IFNPQMVMNQ NQAQFTQNPA  240
MFMPLTYAQL QEHHLLSPPP PKRFNSGGFG PNYPVQRAPF SNPGQELLVR AQQQQQQLQF  300
LPQHLQQQRP TMLVKENMLS PAEGTKEMMN QNQNQQQLQQ AAIDQLFNAA ELIETGNPAL  360
AQGILARLNH QLSPVVLQFA NFTCNQAILE AVEGFNRVHV IDFDIGYGGQ WASFMQEVAL  420
RNCGAPSFKI TAFISSSTHD EFEIGFTREN LKHFASELNL SFELELVSLE ALNSGSWGLP  480
LHVSEGVAVA VNLPIGSFSN NPLSLTMALR FVKQLSPKIV VSLDRGSDRT DVPFAHQIIQ  540
SLHSYSGLLE SLDAVNVNPD ALQKIERYLL QPGIEKIVTG RHLSPKRTPP WRTLFSSSGF  600
SPLTFSNFTE SQAECLVQRT PVGGFHIEKR QSSLVLCWQH KDLISVSVWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2337865091375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342426.10.0PREDICTED: scarecrow-like protein 6
TrEMBLM5X7H70.0M5X7H7_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s05910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-113GRAS family protein