PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G138400.1.p
Common NamePRUPE_ppa001781mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 715aa    MW: 78010.1 Da    PI: 5.4047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G138400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.92.4e-7743571387374
                GRAS  87 vsPi.lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                         +sP+ l+f+++t+NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R+ g+ps++iT++ s++++++ e+  t+e+L++fA+el+++f
  Prupe.2G138400.1.p 435 LSPVvLQFANFTCNQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNCGAPSFKITAFISSSTHDEFEIGFTRENLKHFASELNLSF 525
                         5674279*********************************************************9*9************************ PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                         e +++  ++l+    + L ++  E +aV + l + ++ ++++sl+      L++vk+lsPk+vv  ++ +d+++ +F+++++++l+ ys l
  Prupe.2G138400.1.p 526 ELELVSLEALN-SGSWGLPLHVSEGVAVAVNLPIGSFSNNPLSLTM----ALRFVKQLSPKIVVSLDRGSDRTDVPFAHQIIQSLHSYSGL 611
                         ***97444444.4467776666777777777777888889999999....***************************************** PP

                GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                         ++sl+a    + ++ +k+Er ll++ i+++v+ ++ +     ++   Wr  ++++GF+p+++s+++++qa++l++++++ g+++e+++ sl
  Prupe.2G138400.1.p 612 LESLDAV-NVNPDALQKIERYLLQPGIEKIVTGRHLS----PKRTPPWRTLFSSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSL 697
                         ****665.34668999****************99998....9999********************************************** PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         vl+W+++ L+svS+Wr
  Prupe.2G138400.1.p 698 VLCWQHKDLISVSVWR 713
                         ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.668321693IPR005202Transcription factor GRAS
PfamPF035148.2E-75435713IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MKAMPLPFEQ FQGKGVLDFS SSTSDSQPPQ NQHLHHHHNQ QQQQQKWNQN SNKENCYVGS  60
TEPTSVLDAR RSPSPPTSSS TLSSSLGGGG GASGGGGGGS GSTDTTTCLG TTAAAVYENI  120
SQTPIEESKC GPALGMEDWE SVLPESPGQE QSILRLIMSD IEDPSLGLNK LLQSGSGSDQ  180
QDLEFSAGFH DVVDQGGYDG FEPNTGNLVS NINVDPSLHA TSGSDFAFSN SSPNVQSTNV  240
RLGSSSSPSP MFSASMNNTF PASLSPGMFQ QQQQHMGMDE KPQIFNPQMV MNQNQAQFTQ  300
NPAMFMPLTY AQLQEHHLLS PPPPKRFNSG GFGPNYPVQR APFSNPGQEL LVRAQQQQQQ  360
LQFLPQHLQQ QRPTMLVKEN MLSPAEGTKE MMNQNQNQQQ LQQAAIDQLF NAAELIETGN  420
PALAQGILAR LNHQLSPVVL QFANFTCNQA ILEAVEGFNR VHVIDFDIGY GGQWASFMQE  480
VALRNCGAPS FKITAFISSS THDEFEIGFT RENLKHFASE LNLSFELELV SLEALNSGSW  540
GLPLHVSEGV AVAVNLPIGS FSNNPLSLTM ALRFVKQLSP KIVVSLDRGS DRTDVPFAHQ  600
IIQSLHSYSG LLESLDAVNV NPDALQKIER YLLQPGIEKI VTGRHLSPKR TPPWRTLFSS  660
SGFSPLTFSN FTESQAECLV QRTPVGGFHI EKRQSSLVLC WQHKDLISVS VWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2344171391375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220242.10.0hypothetical protein PRUPE_ppa001781mg
TrEMBLM5X7H70.0M5X7H7_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-113GRAS family protein