PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G110900.1.p
Common NamePRUPE_ppa021970mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 367aa    MW: 42312.7 Da    PI: 7.1078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G110900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF602.9e-191151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n++ r++tf kR +g++KKA+E S+LC+++v++ii++++
  Prupe.2G110900.1.p 11 IANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPK 51
                        89*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-19158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.119151IPR002100Transcription factor, MADS-box
CDDcd002662.20E-23287No hitNo description
SuperFamilySSF554552.75E-21298IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-181150IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRGRLKMEL IANERSRKTT FQKRSKGMMK KAYEFSTLCE VDVCIIIYGP KLTDRPPELQ  60
TWPQNSEQVD RIINKYKAST MSKPAKKTFD LSDLLMDRKN KVYADIYRAR KEMYEAKYPT  120
WDERIESFSE NQLEALLDKL DAKLESGKRT LLNKRNGAAH RLLVTKKEWM GGNPNMGESS  180
SQKEPCNSYM QDHYHEEDQN PTSSLNNNTV DMLQPFAVSS FDHHQPSDQT LPFDNSDQHL  240
NNLMAPNPSS MAMWMLMEGN YNYSNLQYRA GDSSSAHSQS PLEGYHCNYS DQMNMNMMMT  300
NNNIGPLSSS SMSHYYARLM QPAVPYMHQM MQPSISSQQL QVHTSQVKED QYEDINQYLV  360
MNNKMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G110900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219420.10.0MADS-box transcription factor 50
TrEMBLM5X3X50.0M5X3X5_PRUPE; Uncharacterized protein
STRINGEMJ206190.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-24M-type_MADS family protein