PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G058900.7.p
Common NamePRUPE_ppa001310mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 840aa    MW: 94945.3 Da    PI: 6.7174
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G058900.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.41.1e-1364138290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y++Y+++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++              C+a+l+++++  + w+ tk++++HnH+++
  Prupe.2G058900.7.p  64 LYDAYSRHVGFSTHVGQFSRTKPDGPIVTWDFACSREVFKRKNVES--------------CNAMLRIERKGANSWVATKFVEDHNHSMV 138
                         69**************************************999877..............**************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1164138IPR004330FAR1 DNA binding domain
PfamPF105513.2E-30270362IPR018289MULE transposase domain
PROSITE profilePS5096611.288547583IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-12547581IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MDTEVVVDVE GENMEHHMEE NTEPGEKQNV NQNFTGREIS IQDDGNTKPH VGMEFESEEA  60
AKTLYDAYSR HVGFSTHVGQ FSRTKPDGPI VTWDFACSRE VFKRKNVESC NAMLRIERKG  120
ANSWVATKFV EDHNHSMVSP SKVHYLRPRR HFAGATKNAA ETLDATTDVY FATEGNHVSY  180
EPNRGGRSVS PVEPSHPARN LGPVNYIRPS SRKRTLGRDA QNLLNYFKKM QAENPGFYYA  240
IQLDDENRMT NVFWTDARSR TAYNYFGDAV IFDTMYRPNQ YQVPFAPFTG VNHHGQMVLF  300
GCALLLDESE SSFTWLFRTW LSAMNDKLPV SITTDQDRAI QVAVAHVFPQ TRHCICKWHI  360
LREGQERLAH TYLAHPSLYG ELYSCINFSE TIEDFESSWA SLLERYDLLR NDWLQAVYNA  420
RKQWAPVYFR GTFFAAIFSN QGVSSFFDGY VNQQTSIPLF FKQYERALEL SLEKEIEADY  480
DTMCTTPVLK TPSPMEQQAA NLYTKKVFAK FQEELVETFV YTANKIEGDG LVSKYRVAKY  540
EHDDKAYIVT LNVSEMKASC SCQMFEYSGI LCRHILTVFT VTNVLTLPPH YILKRWTRNG  600
KSGVGLDEQS SENQGIETLN MRFNNLCREA IKYAEEGAIA VETYNAAMSA LREGGKKISV  660
VKKNVAKVTP PSSQPSGNIQ EDNMKKSPLP LGEMAPSLWP WQEALPHRFN LNDGGVPVAD  720
LNQPSMAPVS IHPDGAHPDN TVVLTCFKSM AWIIENKNST SAGKVAVINL KLQDYGKNPA  780
GETEVQFRLT RVTLEPMLRS MAYISQQLSA PANRVAVINL KVCKPTVSIS FASQFVPLC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G058900.7.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412679.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020412680.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020412681.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020412682.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020412683.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020412684.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_020412685.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A251QC010.0A0A251QC01_PRUPE; Uncharacterized protein
STRINGEMJ217970.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]