PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G025800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bZIP
Protein Properties Length: 245aa    MW: 27056.5 Da    PI: 8.0704
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G025800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42.1e-1072117550
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          r rr  +NReA r++R++Kka ++ Lee+vk+L   N++L  +++
  Prupe.2G025800.2.p  72 PRRRRPSRNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKIQ 117
                         688999***********************************98886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-1066135IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.27870117IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-873117No hitNo description
PfamPF077166.7E-1473117IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-1373136No hitNo description
CDDcd146866.82E-982117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDDGEVGTSD QAVDTFVDEF LKNTRTCTHT HTCNPPGPDA AHTHTCYHTH TQVLPSEDDD  60
GAKNKEHSVP RPRRRRPSRN REAVRKYREK KKAHTAYLEE EVKKLRLLNQ QLVRKIQGQA  120
ILETEFLRLK SVFLDLRGKI DHELGAFPFQ NQCKTSSVPT EIDCNPQFTA RAVGLCCQTD  180
LPCFCSPVGP SMQASISTSA KAMVPVGGNC QPAVIDCQAN TNEMASAVQN STHSRNLGII  240
GNRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G025800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411771.10.0basic leucine zipper 19 isoform X1
RefseqXP_020411773.10.0basic leucine zipper 19 isoform X1
SwissprotQ8GTS21e-50BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A251Q9W60.0A0A251Q9W6_PRUPE; Uncharacterized protein
STRINGXP_008231525.11e-143(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.13e-27bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]