PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G587100.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 455aa    MW: 51641.8 Da    PI: 6.8799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G587100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81e-49331582128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  Prupe.1G587100.3.p  33 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 122
                         79***************************.89***************888889************************************** PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          s++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  Prupe.1G587100.3.p 123 RSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 158
                         **********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5532178IPR003441NAC domain
PROSITE profilePS5100555.58832179IPR003441NAC domain
PfamPF023651.4E-2434158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSVNDESNKA DHDHDHHHDG GDDDDEHEHD MVMPGFRFHP TEEELVEFYL RRKVEGKRFN  60
VELITFLDLY RYDPWELPAM AAIGEKEWFF YVPRDRKYRN GDRPNRVTTS GYWKATGADR  120
MIRSENFRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPH HETERYQKGE ISLCRVYKRA  180
GVEDHPSLPR SLPASKASTS RSSVLVAPST TISSDNKKQH NTSTNINNNN INTVHSIMEK  240
LQAFNEGQSQ QFHQDHEHQV DQKMSVEPEG SSGNSDVTTV LGLSKRNAYH HNNIGQAHHH  300
PLDQEEGMAA FLHQSNSKQA AANCFSLIPS STNSSATLFT AGSSSVSSSN MNAIDDLHRL  360
LTYQHVQQQA AAASSHHQQQ HVHHHVVQYY DDAHHHPQPN NLFSTFPAVA PHVQSAIPPQ  420
QLAPNALPTA FSDRLWDWNP ISDPNRPDYN NPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-55181793165NO APICAL MERISTEM PROTEIN
1ut4_B5e-55181793165NO APICAL MERISTEM PROTEIN
1ut7_A5e-55181793165NO APICAL MERISTEM PROTEIN
1ut7_B5e-55181793165NO APICAL MERISTEM PROTEIN
4dul_A5e-55181793165NAC domain-containing protein 19
4dul_B5e-55181793165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G587100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225578.20.0NAC domain-containing protein 35 isoform X1
TrEMBLA0A251RKB20.0A0A251RKB2_PRUPE; Uncharacterized protein
STRINGXP_008218619.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-113NAC domain containing protein 35