PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G576500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 604aa    MW: 63102.9 Da    PI: 8.6371
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G576500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.5e-402023374112
                 TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                          k++++++hTkv+gR+RR+R++a+caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++     
  Prupe.1G576500.1.p 202 VKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELSHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISLRSSGSTLSAPpsksa 292
                         589****************************************************************999877777887775555566667 PP

                 TCP  89 .................................kaaksaakskksqksaasalnlak 112
                                                          +            ++++++++ ++
  Prupe.1G576500.1.p 293 shsfpgalalahhphydegfphsgllgfhqhhqQ------------HQQQHHHHHHQ 337
                         7888888888888888877765554444322211............22221111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-40205341IPR005333Transcription factor, TCP
PROSITE profilePS5136927.234206260IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDLSNFQSTN NNKKQQQQQQ SNTSNNNTSH HQLHQHLLHP HPHPHHQQQP KQQQSSPSSQ  60
FVVPFDGSRS SSGAGGGGGG GGGPPFMGSI SIQAGLTSTH TPTTSSATVS AQPPAPSSSS  120
LSSSSSSSPS STSTSTAPPP HLVDASLAIA TRSDSHPSTR PAPLDSAKKN QIHQQQLTIS  180
PTSTTTATPP APPAAAAATQ VVKRSTKDRH TKVEGRGRRI RMPATCAARV FQLTRELSHK  240
SDGETIEWLL QQAEPAIIAA TGTGTIPANF SSLNISLRSS GSTLSAPPSK SASHSFPGAL  300
ALAHHPHYDE GFPHSGLLGF HQHHQQHQQQ HHHHHHQQHQ SPLMTADQIA EALPSGGGDS  360
GGGDSTDSYM RKRFREDLFK DDNQGRGEGS SGGGGSPSGK AFKSSGGLQL QKQQQGSEGE  420
AGPSGLLRPP SNILPPTAMW AVAPAPNSGA AGSTFWMLPV TAGAGGPSMP TGTSGAGPSE  480
AAQMWTFPSA PATHGSTLQA PLHFMPRFNL PSSLEFQQAG SRGSPLQLGS MLMQQQPSQH  540
LGLGVADSNL GMLAALNASY SRGGLNMNSE HHQQNHPLDH HHQQQHHQPQ TTDSGDEAPN  600
SSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G576500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227045.20.0transcription factor TCP8
TrEMBLA0A251RJT60.0A0A251RJT6_PRUPE; Uncharacterized protein
STRINGEMJ282440.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-45TCP family protein