PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G560100.2.p
Common NamePRUPE_ppa019508mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 148aa    MW: 16469.2 Da    PI: 5.0042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G560100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.83.7e-1876872128
                 NAM  72 krknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                         + +nr+t++gyWka g +++v+++    ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl
  Prupe.1G560100.2.p   7 RTQNRVTSNGYWKALGVEEPVITRsscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 68 
                         57899*****************9988877888**********997765289*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3761114IPR003441NAC domain
SuperFamilySSF1019411.57E-197113IPR003441NAC domain
PfamPF023651.5E-9868IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGTRCRRTQN RVTSNGYWKA LGVEEPVITR SSCNSTHKVG MKRYLAFYVG EAPNSGIKTN  60
WIMHEYRLSP LSAGDGASSS SSSSTTTRSS KRRGHLKTVN NEFSEYVLCR VYERDEDDDD  120
DDDGTVLSCL DEVFLSLDDL DEISLPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-141011590166NO APICAL MERISTEM PROTEIN
1ut4_B2e-141011590166NO APICAL MERISTEM PROTEIN
1ut7_A2e-141011590166NO APICAL MERISTEM PROTEIN
1ut7_B2e-141011590166NO APICAL MERISTEM PROTEIN
3swm_A1e-141011593169NAC domain-containing protein 19
3swm_B1e-141011593169NAC domain-containing protein 19
3swm_C1e-141011593169NAC domain-containing protein 19
3swm_D1e-141011593169NAC domain-containing protein 19
3swp_A1e-141011593169NAC domain-containing protein 19
3swp_B1e-141011593169NAC domain-containing protein 19
3swp_C1e-141011593169NAC domain-containing protein 19
3swp_D1e-141011593169NAC domain-containing protein 19
4dul_A2e-141011590166NAC domain-containing protein 19
4dul_B2e-141011590166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G560100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421993.11e-100NAC domain-containing protein 104 isoform X1
RefseqXP_020421998.11e-100NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK69e-36NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A251RIV01e-104A0A251RIV0_PRUPE; Uncharacterized protein
STRINGEMJ254932e-74(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-33xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]