PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G532700.3.p
Common NamePRUPE_ppa002943mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 586aa    MW: 62288 Da    PI: 5.3792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G532700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09208253145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                         r++W++ Ed+ l+ +v+++G g+W+ I r      Rt++q+  rw 
  Prupe.1G532700.3.p 208 RKKWSEAEDLELIAGVRRYGEGNWANILRGDFkGERTANQLSQRWK 253
                         789************************98522359**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-14203260IPR009057Homeodomain-like
PROSITE profilePS5129416.229203260IPR017930Myb domain
SuperFamilySSF466895.38E-12204257IPR009057Homeodomain-like
SMARTSM007172.6E-8207258IPR001005SANT/Myb domain
PfamPF002491.2E-7208254IPR001005SANT/Myb domain
CDDcd116604.96E-14209257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MVEKTKDPEK SYITEEDTAN LLQRYQAANV LHLLQEVAHS QDVKIDWNRL VEKTSTGISN  60
AREYQMLWRH LAYSEAFVDN FDNGAQPVDD DSDLEHELEA FPAVIGEDST EAAACVKVLM  120
ASGLPSDSTH RSGATVEAPL TINIPNGQPS RTHQNSQPPC SMQGMNITVP VSVQKQPLLA  180
MTTSTGATAE GGDANGSASN NMAPRKKRKK WSEAEDLELI AGVRRYGEGN WANILRGDFK  240
GERTANQLSQ RWKYIRKHHH QDLNVGGNSS NKLSEAQLAT RHAMSLALNM PSITANTIGT  300
AGTNTHSKFG GTNATTNSLP STAAEEELQS QQGLKPAKPY QMGLLGSTSK SQLTSKKTLT  360
KPNSNTDGMV RATAVAAGAR IASPSDAASL LKAAQAKNAV HVLPTVSTPL STAVTPSATH  420
PGSLKALPQT SQHAPTNSTL LSKQIKDVSC SLDSELGCTP TEQVQDGAVI SENGQNEEGQ  480
KDKVDSPDQK AELKNLSTSA ENLVGSLDIK GDETDNIAGI GVQSEERQSA KDNETLCSLK  540
GDDPFAADSC ENQSASEQQI GLVSIVGDGC NGKQVLGKEE TGIKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222017.10.0hypothetical protein PRUPE_ppa002943mg
TrEMBLM5XCP60.0M5XCP6_PRUPE; Uncharacterized protein
STRINGVIT_18s0001g07620.t011e-139(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.18e-87MYB_related family protein