PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G480400.1.p
Common NamePRUPE_ppa023908mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 224aa    MW: 24759.7 Da    PI: 9.3035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G480400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-18655255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Prupe.1G480400.1.p  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                        89****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-32565IPR001471AP2/ERF domain
CDDcd000189.78E-23665No hitNo description
PfamPF008473.0E-11655IPR001471AP2/ERF domain
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-20665IPR016177DNA-binding domain
SMARTSM003804.2E-40669IPR001471AP2/ERF domain
PRINTSPR003673.7E-10718IPR001471AP2/ERF domain
PRINTSPR003673.7E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPTSNNNNS SGQDTKPTNQ DSPWSPKALS ELLNSKLRKC CKDPSPSLTC LRLDNDNSHI  120
GVWQKRPAGS RASSNWVMRI ELGKKKKHIS DHHGSMCSSS SSSSSSSFSS STSSSMVGLI  180
EAGMSEADQD EEDKLAMQMI EELLNWNYPI PSPTSNVQEG NII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8425952e-65HQ842595.1 Rosa chinensis clone 1 putative DREB protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224520.11e-165hypothetical protein PRUPE_ppa023908mg
SwissprotQ3E9582e-76SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLM5XID71e-165M5XID7_PRUPE; Uncharacterized protein
STRINGVIT_04s0008g05440.t018e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-65ERF family protein