PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G378000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 98aa    MW: 10872.3 Da    PI: 10.0693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G378000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-091154344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +l+ +a + + ++   +W+ +a+ +g g++ +++k ++
  Prupe.1G378000.1.p 11 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVG-GKSVEEVKRHY 54
                        7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.44761IPR017884SANT domain
SMARTSM007173.2E-7860IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-121066IPR009057Homeodomain-like
PfamPF002495.8E-71154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-41159IPR009057Homeodomain-like
CDDcd001674.12E-71254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASLSSSRNS SWTPKQNKLF EKALAVYDKD TQDRWHNVAK AVGGKSVEEV KRHYEILVQD  60
LMHIESGQVP IPNYKGTGSS GSRGIGDEQR LMKNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33497192RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220818.12e-67PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1732e-44RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM5XVU43e-61M5XVU4_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s03640.11e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-45RAD-like 6