PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G311000.1.p
Common NamePRUPE_ppa011233mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 219aa    MW: 23361.6 Da    PI: 8.77
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G311000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.73.3e-2741081100
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p +     p++q++++ +++k++G++ +l+l++a +++ r+++++sl+yeA+ r+ +P  G+vg+++++++ 
  Prupe.1G311000.1.p   4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGSQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWA 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallkee 100
                          +q++++++l++++
  Prupe.1G311000.1.p  95 QCQAAVDAVLAGSP 108
                         ******99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.1613109IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-214103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGSQH  60
LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIA GLDADALNLI  120
PSPPNKSGDI RHVFRDSNSG ASRNKVTTRN RFKRSMNRTK THPGSLTEFA TGSHMAQFCN  180
FPDPEDLCPS PEGNGAGGDY DGEVGLELTL GLVPMRLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223396.11e-162hypothetical protein PRUPE_ppa011233mg
SwissprotQ9M8864e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM5XZ871e-162M5XZ87_PRUPE; Uncharacterized protein
STRINGGLYMA13G07590.14e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-69LOB domain-containing protein 41