PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G304700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 426aa    MW: 47638.5 Da    PI: 9.0682
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G304700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.31.5e-431693213133
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa 70 
                         g kdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k++ikel +                        +    
  Prupe.1G304700.1.p 169 GNKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTSIKELKQHlnisplaayscstnanatststiT---- 255
                         78*************************************************************999999999987665443332211.... PP

                 TCP  71 seceaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                             a+++ss+++ns+ +       +    +  + +++k++ +   +a+esr +arararertrekm+ +
  Prupe.1G304700.1.p 256 ----AKMNSSTSENSEVAskiqetaNGDVHSIGTLEREKKNRKLCVVARESRVEARARARERTREKMMRT 321
                         ....222222222222223444443333333334444444444678888******************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.6E-43169320IPR005333Transcription factor, TCP
PROSITE profilePS5136937.253170228IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.048300317IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MTMFPSSSSA SNYQRPFPCD TNQQPQLLEK SSTNIIDQHD HENPNSISHD DHHIRQYYSH  60
YSEDHQHQAP NNFLEHDGLL LSYLLSQQQL LVGSSSPNMN SATSHHVQAH DTTEISVVAS  120
NSNKKVMDRV DEDRTAPAAT SKGCSSKKKS NTSNGESKNA KAPRKRSSGN KDRHSKIYTA  180
QGPRDRRMRL SLQIARKFFD LQDMLGFDKA SKTIEWLFTK SKTSIKELKQ HLNISPLAAY  240
SCSTNANATS TSTITAKMNS STSENSEVAS KIQETANGDV HSIGTLEREK KNRKLCVVAR  300
ESRVEARARA RERTREKMMR TRSGLDQYQN LRKQSPDHDQ VPQNPNNDQF SGGHYLWSSN  360
CPNDQLFEPG MMMNSMVMSI NHHDEKVVGS TTIPSGANSE DYDFPSFPGN WGQINNSKNT  420
TGLSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G304700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243405.10.0PREDICTED: transcription factor TCP18
TrEMBLA0A251R8830.0A0A251R883_PRUPE; Uncharacterized protein
STRINGXP_008243405.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-33TCP domain protein 12