PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G280700.2.p
Common NamePRUPE_ppa004312mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 368aa    MW: 40744.8 Da    PI: 8.3119
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G280700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.1e-3491147259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+geHnhe
  Prupe.1G280700.2.p  91 DDGYNWRKYGQKQVKGSEFPRSYYKCTHSNCPVKKKVERSI-DGQITEIIYKGEHNHE 147
                         8****************************************.***************8 PP

2WRKY108.24e-34256314159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C+v+k+ver+++dpk+v++tYeg+Hnh+
  Prupe.1G280700.2.p 256 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFPACNVRKHVERASTDPKAVITTYEGKHNHD 314
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-3085149IPR003657WRKY domain
SuperFamilySSF1182901.07E-2688149IPR003657WRKY domain
SMARTSM007742.1E-3690148IPR003657WRKY domain
PROSITE profilePS5081124.19190149IPR003657WRKY domain
PfamPF031065.2E-2791147IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37241316IPR003657WRKY domain
SuperFamilySSF1182901.57E-29248316IPR003657WRKY domain
PROSITE profilePS5081137.574251316IPR003657WRKY domain
SMARTSM007743.7E-39256315IPR003657WRKY domain
PfamPF031065.3E-26257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTHQQALAQV TAQAAQSSSY FHIPTEYSSS LSTAPATSLT QLPAFTSDST APQEMPSGAA  60
DSGVVLKESS DISHSDQRSQ PSSFIVDKPN DDGYNWRKYG QKQVKGSEFP RSYYKCTHSN  120
CPVKKKVERS IDGQITEIIY KGEHNHERPQ SKRAKDSGNP IGNIQANPDL ASQVHGGHLS  180
KSKKGQESSQ ATHDHLSGTS DSEEVGDAET RVDEKDEDQP DPKRRNTEVR AEPASSHRTV  240
TEPRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY KCTFPACNVR KHVERASTDP  300
KAVITTYEGK HNHDVPASKT GSHYAANNNA LNLRAVNAGT EKINKMDLRN NDQQPIARLR  360
LKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-4391317878Probable WRKY transcription factor 4
2lex_A2e-4391317878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G280700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222872.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-147WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A251R4I40.0A0A251R4I4_PRUPE; Uncharacterized protein
TrEMBLM5XF340.0M5XF34_PRUPE; Uncharacterized protein
STRINGEMJ240710.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-135WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]