PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G220400.1.p
Common NamePRUPE_ppa010222mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 259aa    MW: 29426.4 Da    PI: 9.3812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G220400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51141381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk+
  Prupe.1G220400.1.p  14 LPPGFRFHPTDEELVLQYLKRKVFSCPLPA-SIIPEVEVCKADPWDLPGD---CEQERYFFSTREAKYPNGSRSNRATGSGYWKATGLDKQ 100
                         79****************************.89***************44...46799********************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Prupe.1G220400.1.p 101 IVTSrGNQVVGMKKTLVFYRGKPPHGTRTDWIMHEYRL 138
                         999857778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6010175IPR003441NAC domain
PROSITE profilePS5100557.15414175IPR003441NAC domain
PfamPF023653.8E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERLNFVKNG VLRLPPGFRF HPTDEELVLQ YLKRKVFSCP LPASIIPEVE VCKADPWDLP  60
GDCEQERYFF STREAKYPNG SRSNRATGSG YWKATGLDKQ IVTSRGNQVV GMKKTLVFYR  120
GKPPHGTRTD WIMHEYRLVL AENTAPNAPR EKNSTQLQSP VVPMDNWVLC RIFLKKRGGK  180
NEEEQVQQPC NDRVIRKPKT ARPVFYDFMT KDRANLSLAP CSSSSGSSGV TEVVSSDQVD  240
DHEESSSCNS FPYFRRKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521217615166NO APICAL MERISTEM PROTEIN
1ut4_B1e-521217615166NO APICAL MERISTEM PROTEIN
1ut7_A1e-521217615166NO APICAL MERISTEM PROTEIN
1ut7_B1e-521217615166NO APICAL MERISTEM PROTEIN
3swm_A2e-521217618169NAC domain-containing protein 19
3swm_B2e-521217618169NAC domain-containing protein 19
3swm_C2e-521217618169NAC domain-containing protein 19
3swm_D2e-521217618169NAC domain-containing protein 19
3swp_A2e-521217618169NAC domain-containing protein 19
3swp_B2e-521217618169NAC domain-containing protein 19
3swp_C2e-521217618169NAC domain-containing protein 19
3swp_D2e-521217618169NAC domain-containing protein 19
4dul_A1e-521217615166NAC domain-containing protein 19
4dul_B1e-521217615166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.192021e-120fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G220400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223645.10.0NAC domain-containing protein 83
SwissprotQ9FY931e-101NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM5XFX20.0M5XFX2_PRUPE; Uncharacterized protein
STRINGEMJ248440.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-102NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]