PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G212700.1.p
Common NamePRUPE_ppa018569mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 277aa    MW: 29938.4 Da    PI: 4.7521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G212700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-194392255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Prupe.1G212700.1.p 43 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 92
                        678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.13E-314299No hitNo description
SMARTSM003806.6E-3543106IPR001471AP2/ERF domain
PROSITE profilePS5103220.70543100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2944100IPR001471AP2/ERF domain
PRINTSPR003673.5E-84455IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2144101IPR016177DNA-binding domain
PfamPF008474.0E-124492IPR001471AP2/ERF domain
PRINTSPR003673.5E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDFFNNSSKA NTSPSSSSKT KRKQQNQQTQ QPQQQQQQQQ ETRFLGVRRR PWGRYAAEIR  60
DPSTKERHWL GTFDTAEEAA LAYDRAARSM RGSKARTNFV YSDMPHGSSV TSIISPDESQ  120
HDMSAFFATP LQPQPQTTNH QQSFFTQDPF DAYPYSGGSS GGFGSGSYGP VSGGDEPGSG  180
SGSGSQSHTE LPPLPPCVSS TCYGPDGVMG SDMDMGYFGF SEPTTNNGLD PMMSGSYMGF  240
DSNEFVQHSP LFGSMPPVSD AGIDGFDLGS SSAYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-204499359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G212700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225065.10.0ethylene-responsive transcription factor LEP
TrEMBLM5XK050.0M5XK05_PRUPE; Uncharacterized protein
STRINGEMJ262640.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.15e-35ERF family protein