PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G195900.4.p
Common NamePRUPE_ppa019237mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 144aa    MW: 16195.2 Da    PI: 5.8084
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G195900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.77.8e-1846127290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY++YA++vGF +r+ +s+ks+r+g+i++r + C     + ++         ++  +r  C+a++ +++ek g w+v+k+ ++HnH+l+
  Prupe.1G195900.4.p  46 FYDDYASRVGFLTRVLSSRKSERDGSIISRGLGCRGVSDNGRKV-------MQECAQREFCTAMVLLRQEKPGSWVVKKFLKDHNHPLV 127
                         9*********************************8666655544.......4588999*****************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1546127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEVQMDDQNG TMYTSEGGET TIVEVSTNQE PYEGMLFESE DAARVFYDDY ASRVGFLTRV  60
LSSRKSERDG SIISRGLGCR GVSDNGRKVM QECAQREFCT AMVLLRQEKP GSWVVKKFLK  120
DHNHPLVVQS QKSRRTLSDP SIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G195900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227200.21e-99protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A251R0401e-102A0A251R040_PRUPE; Uncharacterized protein
STRINGEMJ283993e-98(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-35FAR1 family protein