PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G195800.1.p
Common NamePRUPE_ppa010562mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 246aa    MW: 28477.8 Da    PI: 6.1838
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G195800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.24.9e-2772163191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+  + +++r   +r+ tr gC+a+l+++ ++ gkw+++ +++eHnHel
  Prupe.1G195800.1.p  72 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAT-SQNRVlpSRPATRKGCNAMLRITAKDGGKWVIYGFVKEHNHEL 161
                         6*********************9********************9988.33333459**********************************9 PP

                FAR1  90 ap 91 
                         +p
  Prupe.1G195800.1.p 162 NP 163
                         75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-2472163IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMASTSGQGF SPERNYRCWL DETFSSHETA DDELSYTPDV DNNLIETSSQ DFSLTLEPVI  60
GMEFESAEDA RDFYEMYGRH MGFTIRNNRT RRSLKDNAII GREFVCSKEG FRAEKYATSQ  120
NRVLPSRPAT RKGCNAMLRI TAKDGGKWVI YGFVKEHNHE LNPNKIPPRR SHRIAFCEDE  180
KDLKIRELST ELHREKKKSA AYQEKLQIVL KYIEEHTQRL SLKVELATNN MRELESEEQD  240
SSYSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G195800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226039.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLM5XZA20.0M5XZA2_PRUPE; Uncharacterized protein
STRINGEMJ272380.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15811911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-47FAR1 family protein