PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G152500.1.p
Common NamePRUPE_ppa010187mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 261aa    MW: 28869.6 Da    PI: 6.3414
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G152500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.7e-55811841101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+sfw++q   ie + dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  Prupe.1G152500.1.p  81 QLQSFWAEQyqeIEAVMDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 171
                         89*****999899****************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  Prupe.1G152500.1.p 172 FDFLVDIVPREDL 184
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.21E-3367175IPR009072Histone-fold
PfamPF008081.6E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDQQGHGHPT TMGVAGSAAQ ASYGVNPYQS GQMMGLSPTG SVGLMQSPTQ PAGPPASSQL  60
AQHQLAYQHI HQQQQQQLQQ QLQSFWAEQY QEIEAVMDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGGNLPV GSSTDGVPYY YMPAQHAPQV GAPGMIVGKP VMDQTLYGQQ  240
THPYIAQPTW PQQQQPHKDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B9e-41961811297NF-YC
4awl_C9e-4196181994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B9e-4196181994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C1e-40671814119HapE
4g92_C1e-40671814119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.69320.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223486.10.0hypothetical protein PRUPE_ppa010187mg
SwissprotQ8L4B23e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5XZG00.0M5XZG0_PRUPE; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-81nuclear factor Y, subunit C9