PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G148400.1.p
Common NamePRUPE_ppa001884mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 787aa    MW: 91011.3 Da    PI: 7.7666
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G148400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.6e-2069143189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fY+ YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+v+ + ++HnH l
  Prupe.1G148400.1.p  69 DFYSLYATRMGFRVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 143
                         6***************************************765..............699***************************98 PP

2FAR166.95.3e-21223298190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY+ YA+++GF++r+ +  +sk +g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++l+++HnHel 
  Prupe.1G148400.1.p 223 QFYHVYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGRWVVDRLDKNHNHELE 298
                         6***************************************999..............4899***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1569143IPR004330FAR1 DNA binding domain
PfamPF031011.4E-16223298IPR004330FAR1 DNA binding domain
PfamPF105518.0E-27397490IPR018289MULE transposase domain
PROSITE profilePS509669.977674708IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6683710IPR006564Zinc finger, PMZ-type
PfamPF044341.0E-6685705IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGMESSSTHF TIMRSSDTDS KIEDSGNNLV LKAYPMLPMK TVNAEDEGES RVLEPYVGLE  60
FDSADVARDF YSLYATRMGF RVRTGQLYRS RTDGSVSSRR FVCSKEGFQI SSRTGCPALI  120
RVQRRDSGKW VVDLFLKDHN HGLGSTEENH SPILQKKTLT RKNSVVELSH RPKIKSIEEI  180
EDGRPCPSGI ISAKRLKWDG DEMQPEVEPS AGLEFNSANE AYQFYHVYAE NTGFRIRIGQ  240
LFRSKLDGSI TSRRFVCSKE GFQHPSRVGC GAFMRIKRQD SGRWVVDRLD KNHNHELESQ  300
LEVQKTNLFS SKKFIEEEIG GLENEDIVDI NNGNNVKRRR ENHIGSDWYR VLFDYFQTKQ  360
AEDTGFFYAV EVDNGSCMSI FWADGRSRFS CCQFGDVIIL DTSYRKGIYL VPFATFIGIN  420
HHKQPVLLGC ALIADESEKS FTWLFQTWLR AMSGRCPLSI IADQDDVIQQ AIMQVFPGTH  480
HRFSLWQFKA KESEHLRLMN TSFKYEYEKC IYECQTADEF DAAWNALLCR YGLKDNGWLK  540
AMYAKRKSWV PLYLRATFFA GIPFNESIES FFGTRFNAQT QLKEFVSQYE RGLERRREEE  600
RKEDFNSFNL QAFLQTKEPL EEQCRRLYTL NIFRIFQKEL LQSYSYLGFK IYEEGATIRY  660
LVRKCGNDNE KCVVTVGPSN PKVICSCRMF EFEGVLCRHV LRVFQILDLK EVPPCYILQR  720
WTKNAEYGIP CDSESGGNPQ ELKALMVWSL REAACQYIEA GATSLEKHRL AYEIMREGGR  780
KLCWQR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G148400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411213.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A251QXS70.0A0A251QXS7_PRUPE; Uncharacterized protein
STRINGXP_008223038.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]