PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G139300.1.p
Common NamePRUPE_ppa000476mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 1167aa    MW: 130308 Da    PI: 9.2934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G139300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-094681340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         WT+eE e +++a +++G++ Wk++a+ +  +R+ +++
  Prupe.1G139300.1.p 46 QWTKEELENFYEAYRKYGKD-WKKVASVVR-HRSVEMV 81
                        6*****************99.********9.9998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.9454293IPR017884SANT domain
SuperFamilySSF466896.8E-114391IPR009057Homeodomain-like
SMARTSM007171.9E-64391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-54680IPR009057Homeodomain-like
PfamPF002495.4E-84681IPR001005SANT/Myb domain
CDDcd001672.66E-74781No hitNo description
SMARTSM011351.1E-56628729IPR033471DIRP domain
PfamPF065842.6E-32628728IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1167 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSYMNEA ASNKYGDNAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR  60
KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCVLGGSDS  120
EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI  180
RPHAVKKRTP RVPVAYSNDQ DNSRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG  240
GSPLVSWTPK RKAKGTTPSP VRNGERMCVE SEVTNARLHG CEMDEGGCEL SLGSTEADND  300
YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEVDESKNK HVEDIKEACS GTEEGQKLGA  360
IKGKLDTKVA KSARSFYKDT RKKSKKALIG GDEGSPFDAL QTLADLSLMM PEAADTESSA  420
HVKEDNFNIA NKSKLKGSRP IPGVEHAVFK TSKLGKLGEG VHQSNSGLQK RKQKSLSFKI  480
YNEAQTDCYA SDNEKIEATV EVKKSASKGK RSSHYTTHPK QGKLVKKTLW NASTTIDRKR  540
EENNSGLSTV QVPSANPANL PTKNKGKWEM DMQKSSIQKD TKSPESILDD QPDKLGPSFR  600
NRELNIKEKL SNCLSRYQVR RWCAFEWFYS AIDYPWFAKR EFVEYLDHVG LGHVPRLTRV  660
EWGVIRSSLG RPRRFSEQFL KEEKEKLNQY RESVRTHYAE LNAGTREGLP TDLARPLSVG  720
QHVIAFHPRA REIHNGIVLT VDHSRCSVQF DQPELGVEYI MDVDCMPLHP AENLPASFRK  780
HNVTVNRYIE NLKELKINEQ LKEGTTKGYM KISSSDKLVS TGVPGYILPS NHRINKSSKQ  840
TGVKSSSFNV QAKVGPGETA STRVANYQPS IPAQTQAKEA DVQAIYELTR ALDKKEAVVS  900
ELRRMNDEVF ENQRDEDNSI RDSEPFKKEY AAVLLQLSQV NDQVSSALLC LRQRNTYRGS  960
SPHTVVKTMD NLSGPGSLSN SYGYSCDVQE SASHMREIVE SSRAKAHKMV DAAMQAFSSL  1020
RKENNFDKIE EVIDFVSNRL SDDAGMLAMG SSTTLADPIP FSQDQLTSCT SKPLATGCAH  1080
DPPKSNNLSN QSEEKLLSDL IVNCVAAFMM IQTCTARQFP PADVAQVLDH AVTSLQPFCP  1140
QNLSVYGEIQ KCMGIIRNQI MALVPT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227363.10.0hypothetical protein PRUPE_ppa000476mg
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLM5XR630.0M5XR63_PRUPE; Uncharacterized protein
STRINGPOPTR_0008s22660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding