PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G130300.1.p
Common NamePRUPE_ppa008563mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 290aa    MW: 31563.9 Da    PI: 7.9747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G130300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20112161255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a++ a+++++g
  Prupe.1G130300.1.p 112 VYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDDAARRIRG 161
                         69*******.**********94....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-22112169IPR016177DNA-binding domain
PfamPF008471.6E-13112161IPR001471AP2/ERF domain
SMARTSM003804.7E-40112175IPR001471AP2/ERF domain
PROSITE profilePS5103224.276112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-33112170IPR001471AP2/ERF domain
PRINTSPR003671.6E-11113124IPR001471AP2/ERF domain
CDDcd000187.48E-23113171No hitNo description
PRINTSPR003671.6E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MCGGAIISDF ISAKRGRTLT AEDLWSEFDT ISDLLGLDHS SSSNNNNKKD QFEHQQNNKS  60
IAQKPKIPLS KGAGTSEKPK KTSPGAGAGA GAQKEEEVGK ASDKNKRVRK NVYRGIRQRP  120
WGKWAAEIRD PQKGVRVWLG TYNTAEEAAR AYDDAARRIR GGKAKLNFPE LPPSSVPAPA  180
TPPLKKRCVV GPAESTQSSL GSSGNYCNCD PFEGGEIYGK KEVGGEYELK EQISSLESFL  240
GLDEEEPSEV NGRGGGESNN SLDLWMLGDL VTHHHHQQQQ QQQQGQQLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22113169360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.300.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G130300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8250980.0HQ825098.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.c) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222650.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLA0A251QWR80.0A0A251QWR8_PRUPE; Uncharacterized protein
TrEMBLM5XD330.0M5XD33_PRUPE; Uncharacterized protein
STRINGEMJ238490.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-47ethylene-responsive element binding protein